| Actinidia chinensis |
2019 |
A high-quality Actinidia chinensis (kiwifruit) genome |
https://doi.org/10.1038/s41438-019-0202-y |
| Ananas_comosus |
2022 |
The highly continuous reference genome of a leaf-chimeric red pineapple (Ananas comosus var. bracteatus f. tricolor) provides insights into elaboration of leaf color |
https://doi.org/10.1093/g3journal/jkab452 |
| Arabidopsis_thaliana |
2018 |
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell |
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell | Nature Communications |
| Averrhoa_carambola |
2020 |
The genome sequence of star fruit (Averrhoa carambola) |
https://doi.org/10.1038/s41438-020-0307-3 |
| Carica_papaya |
2022 |
SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya |
SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya | Nature Genetics |
| Citrullus_lanatus |
2022 |
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding |
https://doi.org/10.1016/j.molp.2022.06.010 |
| Citrus_clementina |
2014 |
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication | Nature Biotechnology |
| Citrus_sinensis |
2022 |
A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance |
https://doi.org/10.1093/hr/uhac247 |
| Durio_zibethinus |
2023 |
Resequencing of durian genomes reveals large genetic variations among different cultivars |
https://doi.org/10.3389/fpls.2023.1137077 |
| Fragaria_chiloensis |
2022 |
Chromosome-scale assembly with a phased sex-determining region resolves features of early Z and W chromosome differentiation in a wild octoploid strawberry |
https://doi.org/10.1093/g3journal/jkac139 |
| Fragaria_nilgerrensis |
2021 |
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
https://doi.org/10.1073/pnas.2105431118 |
| Fragaria_nubicola |
2020 |
Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry |
https://doi.org/10.1093/molbev/msaa238 |
| Fragaria_vesca |
2021 |
Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca) |
https://doi.org/10.3389/fgene.2021.671371 |
| Fragaria_viridis |
2021 |
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
https://doi.org/10.1073/pnas.2105431118 |
| Litchi_chinensis |
2022 |
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars |
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars | Nature Genetics |
| Malus_baccata |
2019 |
Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance |
https://doi.org/10.1534/g3.119.400245 |
| Malus_domestica |
2017 |
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
https://doi.org/10.1038/s41467-017-00336-7 |
| Malus_sylvestris |
2020 |
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
https://doi.org/10.1038/s41588-020-00723-9 |
| Mangifera_indica |
2021 |
Chromosome-Scale Genome and Comparative Transcriptomic Analysis Reveal Transcriptional Regulators of β-Carotene Biosynthesis in Mango |
https://doi.org/10.3389/fpls.2021.749108 |
| Nephelium_lappaceum |
2022 |
The chromosome-level rambutan genome reveals a significant role of segmental duplication in the expansion of resistance genes |
https://doi.org/10.1093/hr/uhac014 |
| Prunus_armeniaca |
2021 |
Chromosome-level genome assemblies of five Prunus species and genome-wide association studies for key agronomic traits in peach |
https://doi.org/10.1038/s41438-021-00648-2 |
| Prunus_avium |
2020 |
A de novo assembly of the sweet cherry (Prunus avium cv. Tieton) genome using linked-read sequencing technology |
A de novo assembly of the sweet cherry (Prunus avium cv. Tieton) genome using linked-read sequencing technology [PeerJ] |
| Prunus_domestica |
2021 |
Defining the ‘HoneySweet’ insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica) |
https://doi.org/10.1038/s41438-020-00438-2 |
| Prunus_kansuensis |
2022 |
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance |
https://doi.org/10.1186/s12915-022-01342-y |
| Prunus_mume |
2021 |
The chromosome-level genome provides insight into the molecular mechanism underlying the tortuous-branch phenotype of Prunus mume |
https://doi.org/10.1111/nph.17894 |
| Prunus_persica |
2021 |
The Draft Genome of a Flat Peach (Prunus persica L. cv. ‘124 Pan’) Provides Insights into Its Good Fruit Flavor Traits |
https://doi.org/10.3390/plants10030538 |
| Prunus_salicina |
2021 |
Chromosome-level genome assemblies of five Prunus species and genome-wide association studies for key agronomic traits in peach |
https://doi.org/10.1038/s41438-021-00648-2 |
| Prunus_sibirica |
2021 |
Population genomics of apricots unravels domestication history and adaptive events |
https://doi.org/10.1038/s41467-021-24283-6 |
| Punica_granatum |
2019 |
The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars |
https://doi.org/10.1111/pbi.13260 |
| Pyrus_bretschneideri |
2012 |
The genome of the pear (Pyrus bretschneideri Rehd.) |
http://www.genome.org/cgi/doi/10.1101/gr.144311.112 |
| Pyrus_pyrifolia |
2021 |
High-quality genome assembly of 'Cuiguan' pear (Pyrus pyrifolia) as a reference genome for identifying regulatory genes and epigenetic modifications responsible for bud dormancy |
https://doi.org/10.1038/s41438-021-00632-w |
| Rubus_idaeus |
2022 |
A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.) |
https://doi.org/10.1371/journal.pone.0265096 |
| Rubus_occidentalis |
2018 |
A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome |
https://doi.org/10.1093/gigascience/giy094 |
| Vitis_arizonica |
2021 |
Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation |
https://doi.org/10.1186/s13059-021-02467-z |
| Vitis_rotundifolia |
2022 |
Chromosome-level genome sequence assembly and genome-wide association study of Muscadinia rotundifolia reveal the genetics of 12 berry-related traits |
https://doi.org/10.1093/hr/uhab011 |
| Vitis_vinifera |
2020 |
Portuguese wild grapevine genome re-sequencing (Vitis vinifera sylvestris) |
https://doi.org/10.1038/s41598-020-76012-6 |
| Ziziphus_jujuba |
2021 |
Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature |
https://doi.org/10.3389/fpls.2021.773090 |